NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187807_1020058

Scaffold Ga0187807_1020058


Overview

Basic Information
Taxon OID3300017926 Open in IMG/M
Scaffold IDGa0187807_1020058 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0187807_10200582F013663GGAMTARPDRDGDEQFGLLGIAWEEAVQRWQDEVAGRFDADRWTPLAQRSRAYLEALRTLMDVLETAERHRVLTAVPMARSDIRI
Ga0187807_10200583F014996GGAVTKGGSGGTNIGYWGTNRVHADIDALKGFHEALVRFRYAQRGVAERGGDQIEMTRASLAAKASRWQSRLEQCHAELDACRAGGGEEAADCSAYVRAVEQTGERLEHIRRWQQRVDIEASEFGGTAGAYLDLLDSDLPRAESQLLAIITSLEAARRVPAGET
Ga0187807_10200584F001698AGGAGMSGVINDIDALAEFRTHLMQFNRDLAENFATIRGYWRELGEVWRDDMYRLFGEALDEVTPGITVYLAATEGHEAHLAALIERLRSYLETGLGAGAGAGAGTSRTETDRGKPT
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