NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187807_1068775

Scaffold Ga0187807_1068775


Overview

Basic Information
Taxon OID3300017926 Open in IMG/M
Scaffold IDGa0187807_1068775 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1102
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003342Metagenome / Metatranscriptome493Y
F071467Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0187807_10687751F071467GAGGMMLAPAAVFKIPTESPQPARRAARLARRAKAARPAPGRVLANGTGRAATRGGGEVVELGYGITVYPAREESGRWRAVWYEDGKRQQCEAGTEQKLAAKLEKVTERLEADAPNMKLPGADLIRYYLDPDR
Ga0187807_10687752F003342N/ASVLLSELLLRHPELVAEAEEITSTLLVVEDDQELADEITARLRALRASGPVSVDTGRGRVLDVLQPYIDDLTRRKERGARRAAADVATAVLLGLYECREDTDEDMLLVRMGLPGAADDLARIVYAKVKPLHLSLPSLADECPEWEWYEESWNPYC
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