Scaffold Ga0187824

Basic Information
Taxon OID	3300017927 Open in IMG/M
Scaffold ID	Ga0187824_10000097 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017927 Open in IMG/M

Scaffold ID

Ga0187824_10000097 Open in IMG/M

Source Dataset Name

Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13875
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

13875

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (71.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

35.9061

Long. (^o)

-76.1569

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014286	Metagenome / Metatranscriptome	264	Y
F020888	Metagenome / Metatranscriptome	221	N
F099102	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187824_100000977	F014286	AGGA	MINLIFFAVLGVVLFGSFIFLALPGRGRKSLPESSAVRAVTEIIDLEGSSFSSAKRLLDDTDYQLLCSNPDLRNLAERLRNDRRQLALTWISQLQNDLLRLWRFRRFLIQQGVPSSVREELGTLQALVLSLTLLTFIRLSIRAAGPFALPRATRQAGQMVDSMSKGAALVLGRIPVAGWAEIERSWAKSAA
Ga0187824_100000978	F099102	N/A	MMLASDVICISAVILEGGLLLLFLGKGLWRAYSFLFAYTIWLFIGNSAILASFLYLPAIYPALYWNIDSIDVVLRFVVVWEVFHQTFPRKSGLNKTLSKGLGIIAATLLAFACGTFLVYQNFTGPRSIHLALDRSFAFIQALMILGTLVTARYYGVKCGRNVRGIALAFGAWVSISTVTNAMADLPGSFLAYWYYLRPLSFVVMMAVWIWALWVYEPNPPIMESDAAELSQWTEDWNRTISAARTIIRP
Ga0187824_100000979	F020888	N/A	MLREKPISRYLQNVLEALPSAFAQLVFLSSLRDPYTGRYLHEGWASVSTPEEVNSALRETHRSVFEAVVNLSLMDLSKELRRHFNSLGQVEVRVANLWLETEPYYEMIPEGCSLLARRFFISQFRSALEVLIQAPGWTYLEEPASSPLPQPDPISPPRWLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187824_10000097

Overview

Ecosystem & Geography

Associated Families

Sequences