NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187806_1014209

Scaffold Ga0187806_1014209


Overview

Basic Information
Taxon OID3300017928 Open in IMG/M
Scaffold IDGa0187806_1014209 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2254
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F004392Metagenome / Metatranscriptome440N
F082398Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0187806_10142091F082398N/AAKCFDRYDVLMILAVIVIYSSLSGLLRGTGLSEGTVGILPLILFAAGILLKPCAVQFIEKRRKDRKAETHDGICHVHADEKQEIARKETVERCQ
Ga0187806_10142092F004392AGGAMPVNGPETIADSKPSQPVASEGRSVRATKDAKPTVGRGAATRRRRDRQESSQTNGEERFFLAGANRNGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNSPAS
Ga0187806_10142093F001528AGGAGMSEKNQIVVVLIVALSLGAFVDRITALKISAGVVLLWTLQNQPAVFECIRKLFSFTRGELSVREYRGGATTVWAS
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