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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017929 Open in IMG/M |
| Scaffold ID | Ga0187849_1000001 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 576802 |
| Total Scaffold Genes | 544 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 441 (81.07%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000313 | Metagenome / Metatranscriptome | 1323 | Y |
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F004185 | Metagenome / Metatranscriptome | 449 | Y |
| F005731 | Metagenome / Metatranscriptome | 391 | Y |
| F006229 | Metagenome / Metatranscriptome | 378 | Y |
| F019380 | Metagenome | 230 | Y |
| F030998 | Metagenome / Metatranscriptome | 183 | Y |
| F037334 | Metagenome / Metatranscriptome | 168 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187849_1000001131 | F037334 | AGGGGG | MASEHQEQQATNHALDTLANWMKAGTHEGISFEVSRLTNDLFTDSFLGGGDASRFTASGHRGTLTSQLSNANILDSNGGVPHQFPIQFAFDLNTGKAAGNWNNPVTAQAEAVTVTLTFFKSATRPEGKYYIFFSDESSDKAGYTFTFLLL |
| Ga0187849_1000001201 | F005731 | GGAGG | MASRKLFSTLVITWVAVPSLAIFLRAGPAKAQNMSASYTFLVASGFLCDPGDSATCPAVVKSPNGDTYEMSGAGTFSTQGKSATAAGTFTHKSSNGTVLETGVWIASELVSFDSYGIAPGALMRLNPALNPAQLGAWRLRIFSGSMPAGGRAVFRIHLLPVSGLSKNATLQVNCAVGKVPPEHEVGGIKLAFEGGGVEFDEEISGRALFLLARPGASAATKAPAPDADTNPAPAEAEQ |
| Ga0187849_1000001284 | F006229 | GGAG | MSKLEGTATLVNISSQKWPPRYRTYFGSLEINSPAPGEHYAVTRIEGCMGVIDLGDKRTIEYAIPARAIAEDIAREINGDSGEGSFHGVFVAEGELPTVAELARARERLEDFQRRLVAAADLEWERSHNPMFITDLERRAARELRFEKPWLYDPKPMAECPACAEKIKPGVAVCRSCGAILDRAKAAQFGLLGEVEKDAPVATATLGSTHERRRAEQSRPGDE |
| Ga0187849_1000001288 | F000739 | AGG | MRTVELWLKGIAAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGDTLRIALAAALINAVIGVAAYLQKSPLPET |
| Ga0187849_1000001289 | F000512 | N/A | MIHVVRETHEAPSAVVHRLERAGGLNRFGEPNYRAVWGWSRLAWIGGKFEERDPETGALLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRTWYAQTLEVTGGRSVPALGPYPSRGDYEHCFTLENPRGEFIQLTPTVAEYVALAIDSARRLPCRKRRQAIEAREQRLDREYDAWAYELMDGGAPAFVTKL |
| Ga0187849_1000001458 | F019380 | AGGAGG | MRFRILILLAFVSLASLAVAQQQHCRKVDIDKSSGSCTVPDPKLTPGEMDAKLACVSNQERPRRVTVAEKNQVLANYGYPPDTDKSTGEFDHWFPHWMGGSDGIKNIWFEPHAGKFGSFAKDKVEDLLYRKVCVDKTMTLKEAKAQYLSGWTKLVPKK |
| Ga0187849_1000001463 | F030998 | GGAGG | MKHDDKNGKMTASMEEVAYYNMFLTEAMFELLAEKGILTGAEVLERVKKLKKETHPQFKWLQ |
| Ga0187849_1000001478 | F004185 | GGAGG | MLKKTYVRDGKNRVIGSLTTGFEGSFETLVRDEHDNVIGRTSQQFGTTRDGRGKLVSLNTADPGLLFNRKK |
| Ga0187849_1000001495 | F000313 | N/A | MPKPVERWLLFKYFGGELTLLSKPLKKKEQAERERQKYPERERKTIGIGVVRTKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |