NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1000022

Scaffold Ga0187849_1000022


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1000022 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)194644
Total Scaffold Genes176 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (77.84%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010488Metagenome / Metatranscriptome303Y
F015917Metagenome / Metatranscriptome251Y
F032595Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_1000022133F032595GGAMPLYFSAHTTACLTKQALRELMKGLLEVTGVNIRRSVASQIGGRMLVEAEAPDQKTLEKFFEDRNINCEWVMRIDLDASAGAVAEL
Ga0187849_1000022169F015917GGAGVTRKRKKVLVGNIEVTPLTAKQHRRLEERIKKRHEKLRKRYREIHGKTVDWISYSFEDGSLYIDIRFKDKTDFSLRFSPQIVTDGIDLSDMSSGNFKLIRE
Ga0187849_1000022171F010488AGGAGGMRIVLKVSSNNEYCNEGCEFALLDLTPELARLAMGRIATLREQKNIDPDIDEVYYWAYFVEYFSPWKDLASSAAEVEGTTVTLQAMLDELSIEEKEIVCVHETFQVSPAQIAAVECEQMIVREGSIAFVAIPKHASFYAQTVELPLAMLEAAATTRVSTTQV
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