NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1014761

Scaffold Ga0187849_1014761


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1014761 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4786
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007120Metagenome357Y
F008540Metagenome331Y
F013506Metagenome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_10147613F008540GGAGGLRISQPERALIARETREENRRELARMLDQISKGRASRLPAPPPVSLEAQFQMSMHRTREDVQRAKDVQAAHILRWLQG
Ga0187849_10147614F013506AGGAGGVNYQHLHYQFPAEPFQRWHVIEDRSLPRPLRFRHPCKPAEKPDPKVNFGVSELSARLEHAGVEYIRIALGHDAKSFDWAFCMISGALSGLEVPGDGVWYPVISWVRDDGFYAVAMRDPMPFRDACHLFGFDIPAGKPGVPKRIKRDVARGKTSLFGELLETRELNQWDLLHTVMLADGKTTCDVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVQVGDLIQITGAMPNGQIKANCLIWDIEHDLVVWDVKQELRAWQGRIYLSVQRCPVWTRCIWAGSTASSFR
Ga0187849_10147616F007120AGGAGGMKTLIIVLSAACAVVAYYFGLRYFSGRDLGFTPARKYVQSLAKNLLHTELTAARE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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