NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187849_1017157

Scaffold Ga0187849_1017157


Overview

Basic Information
Taxon OID3300017929 Open in IMG/M
Scaffold IDGa0187849_1017157 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4261
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002337Metagenome / Metatranscriptome569Y
F071442Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0187849_10171571F071442AGGGGGMSLVHGEESSERALKAAHIEVLSKVLRTPISDLEEDLRKSTRASEETAGAYIEGMQEQFNELLPSPDAVSARHLNAVLVALSNLEKNRKP
Ga0187849_10171573F002337GGAGMNLAVILVIAAVLALGIILSLAVTRSLQARGSANLAATIRPIDVEAFRNLINPAEDDYLRRRLPPAQFRLVRRARLRAMAAYVQVAGRNATVLARVGESALASGDPRVAEAAQQLVNHALLLRRNSTVALARIYIALAYPNSGFAALRVVDRYEQLSSSAMLLGRLQNPAAAVRLFRS
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