NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187801_10109332

Scaffold Ga0187801_10109332


Overview

Basic Information
Taxon OID3300017933 Open in IMG/M
Scaffold IDGa0187801_10109332 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1054
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006757Metagenome / Metatranscriptome365Y
F044385Metagenome154Y
F098478Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187801_101093321F006757N/AMRNFAVLPPIKDKAQMALLNLTAFREISTPDLIAMAQAMPGGTKVNIPDRLTAIVLILGTRPVDTD
Ga0187801_101093322F044385GGAGGMLIRNSDGEVAGEMNVSITQDGTVIRTNTMYQNGRPVTQNISIRDSHGEVRTTNVIGGKILP
Ga0187801_101093323F098478GGAGGMKKTGKSAVDVKKAAAGDKPEPNGNGKAEKAKVVKTQSFAPANTKLVKRGFVKMFVDFVVKRGSVTTEDLAAEFAGRQVEGKKITKQRVLRYAHWCVNKGVLKAK
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