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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017934 Open in IMG/M |
| Scaffold ID | Ga0187803_10000103 Open in IMG/M |
| Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34473 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (81.08%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000188 | Metagenome / Metatranscriptome | 1692 | Y |
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F005283 | Metagenome / Metatranscriptome | 406 | Y |
| F006125 | Metagenome / Metatranscriptome | 381 | Y |
| F006229 | Metagenome / Metatranscriptome | 378 | Y |
| F009917 | Metagenome | 311 | Y |
| F084509 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187803_100001031 | F009917 | AGG | MISAPMTMLIAVVSVIAQSVVFFRWMHQRIRDDEIQRVFIRDLALHHLPAIYRALHMIAEQQGIALDETPIVNYVDLRNGHRRT |
| Ga0187803_1000010311 | F006125 | AGGAG | MAITISLSPLNVDSSASNFVYAIATLTFTGNYPTGGDTLDFTAVADKLPSTTVVQAFSESQNGDGTYFYVPVQGTALNNWKLKTFSGVGTELTAGAYPGTVTGDIVQLSITARKLL |
| Ga0187803_1000010314 | F000512 | GAG | MIQVIRERHEAPESVARWLEMAGGLNRYGESNYRVVWGWNRLAWIGGKFEDRDENGELVREVVELRREPKYAAVNRWHVERWVPPEAYGSPKEWYAQTVERADGRNVPALGPYPERGEYEHCFTLEGRDGEFVQLTPTIVEHVARAIEWSRGMPKAKRRERLYEREAREERAYEGWAYEVLDEGVPALHGQEFVTVG |
| Ga0187803_1000010322 | F000885 | AGGAGG | MASAKVVFIGEVAQIAGVGAVVLGVVLSLHHWGAAAALIGGIAAFFVGKKLRGA |
| Ga0187803_1000010329 | F000188 | GGAGG | MSVKAEMAFDVCWEVYRGAREILETKRGVGALDWQQDAKYMWRPELRPKLRDWVADFALAGQAGLQGPERASRMVMFRLYYLGLAPYEMARHFLGLSERSWVNWSEEIRKRCGEELLRRGLFPPRKYFNGEE |
| Ga0187803_1000010336 | F005283 | N/A | MVELTRLQMAMMERLFEEGFRPIAIAPYESALCVHRGECAAVLAPVENGGLRLLAPATVMVEGNLSVRLKRASGDVFVWKQNEVAATEERLMELEKFRVELVRILEMAGKQ |
| Ga0187803_100001035 | F084509 | GAGG | MPSYSNALPPVSVGFGESAAVIASTDAIFPAPFKSAQVALAPNFSSGKVRCAVEIIWSGAPGSISVQLQTADTDADAAYVQEGSAITTVNTGNVSRAEFTDVVARFARIYIATLPNNVSATAKISA |
| Ga0187803_100001038 | F006229 | GGAGG | MKTQGEVAVLVNISTQKWPPRQRTYLGALNIATPEPGQAYAITPIQSCKGVIDLGDRHTMEFLITAREIALDLAREINGDSGEGSFHGVFVAEGPAPTEAELADARTKLDAFHRRLVEKADLEWERSHNPMFITDLERRAARELNLDKPWLYDPKPQQDCPACGERIKPGVAVCRSCGAILDKERAAKFGLASGREQVVELPGKILEKAKKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |