NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187803_10003226

Scaffold Ga0187803_10003226


Overview

Basic Information
Taxon OID3300017934 Open in IMG/M
Scaffold IDGa0187803_10003226 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6423
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001083Metagenome / Metatranscriptome783Y
F010187Metagenome / Metatranscriptome307Y
F087285Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187803_100032263F001083GGAGGMYMDERQLAISVLEGLREDLTYARLNNGSRILDVADLRQYIYEQVSRIRTSAYLTGALFDNSDGKGQDISKSNGHNGRAHC
Ga0187803_100032264F087285AGAAGGMFTKVIKWSAIAALIGGAFLRSAPDYAFLLRFVVAAASIVVLTQAATMRRYVWMILFLVVAGLFNPVFPVPFSRYISSIVSTFALFLFFFSLELLKPEPRLASIADSARKGEPL
Ga0187803_100032266F010187AGGAGMHRQELMNPDLLSEIVLLGSGSLLFVVLLLIVVTALTRV
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