NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187803_10007468

Scaffold Ga0187803_10007468


Overview

Basic Information
Taxon OID3300017934 Open in IMG/M
Scaffold IDGa0187803_10007468 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4345
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F057004Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0187803_100074681F057004N/AMSEAKQFDSSKPFVVPILSGGEKRCEVRFPSDKEWCDWARAQRTVRHFLGRGKSKSDDVDLPRINAELFAKIRIDRDGPEFDEAEA
Ga0187803_100074684F002448N/AMLNPKTLVGEWVSALQSLPTLITVLGNGSGSIQGYSENAVVFGHRTQNNVRLAILSMPPGSIMVVWQGTRTGRLGNALQFVHDFSLYFRAPESDSVGYEDIFALLVNGTPTGTSLILLHTPIDAYCEPMDFYLPTCARNTVVIGADGSTFEYFEARVSLIENTASN
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