NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187848_10027407

Scaffold Ga0187848_10027407


Overview

Basic Information
Taxon OID3300017935 Open in IMG/M
Scaffold IDGa0187848_10027407 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2914
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045016Metagenome153N
F045053Metagenome / Metatranscriptome153N
F052500Metagenome142N
F091215Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0187848_100274072F091215AGGMKPTADETIRFYREDGAYVLVHDGTLDGGSNLHYVIRLIEREMRLKLSSLGYFGQGTHSQERFRSGQPIDEHAFARRTRQLLRLPLAELAACLMAKGVLGPKPGEPAFGDLNEKTGAAALKEWALSYYEANEITCPGSLNTLERNRLFRWRRIPFEYLRHNLQGSYEIPVKVECYRQLLGKGHPLPPLICRRQGWDLLEGYHRLSAHEKVGSETIPCVIIGRS
Ga0187848_100274073F045053N/AMTTVASYRIPGFGTVDVVQQNDGRNRFWNLFAASGECLNEGHPFWRKPQRKQVEAFLAHDLKEALARIEKKCERLKITQEDLDEVIHEAAQAGNRRLNQVSEEKQQERLITTAEEQAARVNNGGRASQLVYLLEAYGEAGAVKALQDRHETNG
Ga0187848_100274075F052500N/AMTTQAQRHKASEIASEISKLQGIKSAVVDDDNGYGSFNLFIELRNRLEGHYHLSRRIEFEIPLHGLMARITRIIERHGARLEWHEPPRRQYARPGHGKKLFEGYSTDSYKISVHIPQPAEEVQRQRETQLAFA
Ga0187848_100274076F045016N/AGKRPTRSNVRRGAGVGKKDIMTLAIARPPVVTGASLVSAACRKYQEAVDKFKRVEAEWQTLPTQEAVMRVVETQGILRETRQLLDRGTSQMTGMNSPEWGDATGQNTRDEVAECLQDAHDLGNRVDDLLAGCDRLIETCLAHQEAYERYQTGKALCIVVAGAILTIGVALYFLLR
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