NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187848_10045033

Scaffold Ga0187848_10045033


Overview

Basic Information
Taxon OID3300017935 Open in IMG/M
Scaffold IDGa0187848_10045033 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2149
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F015314Metagenome / Metatranscriptome255N
F069486Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0187848_100450331F069486N/AVINPKTILGEWVTALQSCPDLVTAIGGNGSNIRAFMEGLATDNNLRLAILQMPPGSVLVAWNGTTPRRLTGGSLHFAHRFSIYLRAPEQDSTATYADLFWLLVSAVPTGAPSWESLLHFQIDPDCYPMDM
Ga0187848_100450332F002261GGAMPNWPNIEALVDGVVLQTFGEPVVYQPVQAGAAQGSPFTVTAVRHLRVREESGAMANFEEISVNPSDFSNPPAKGDWVTAWGTQYVVTTVRQPDAYGMLNLALLQRS
Ga0187848_100450335F015314GGCGGMMLRRESWARLTRGGVPLLYVLRPLQGFTPPDIGAEYPPPDATNKVQLTRTRQLYEQRRIGTQPEAERALSRLPKQDPAKPGKERAHRRQSVVRD
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