NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187848_10114076

Scaffold Ga0187848_10114076


Overview

Basic Information
Taxon OID3300017935 Open in IMG/M
Scaffold IDGa0187848_10114076 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1218
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y
F020836Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0187848_101140761F007120AGGAGGMKNLIITISVVCAVVAYYFGLRYFSGQDLGFTPASKHVRNLAKNLLHTEVTAAAEAGTAPQPTSEQAA
Ga0187848_101140762F005112AGGAGMSLVTRYRLFWAALMAALLGVAFWKNCQSYPHKSRLWRLGKAVIDTGLVMLMVIYAPALLLMYVVIWLTSPFKNRIIQVTTAFAFILAVTHLAGVVFEADAVLGVFAVDLLTGQVLARMDKRERNKLAKAV
Ga0187848_101140763F020836N/AMRRAWGMTLLLGASVALFLGPQQVLAQACKDEVSMVEGSKQALVELTETVKKESLADFERLNHQKSVVNKLTLHNSMLGGLVSCLEKAAQDTTAPKEQVAAAKAQHDASAKLQEKIQQERGAIKDAQASKGAKALIEKLDLTP
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Institute for Fundamental Biomedical Research
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