NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187821_10047178

Scaffold Ga0187821_10047178


Overview

Basic Information
Taxon OID3300017936 Open in IMG/M
Scaffold IDGa0187821_10047178 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1541
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043740Metagenome / Metatranscriptome155Y
F099977Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187821_100471781F099977N/ARATNLNRHGAAVALQRELLVGSTVAVKNQRGTMVTARVVAQLAAFQGIPTYAIEFLEQNEQSRNFWGISFPSASTE
Ga0187821_100471783F043740AGGAGGMELILTYEELELLDGILEQRHREMLKEIAHTDHHEFRTALRNNEKMLESILSRLRAA

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