NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187809_10008678

Scaffold Ga0187809_10008678


Overview

Basic Information
Taxon OID3300017937 Open in IMG/M
Scaffold IDGa0187809_10008678 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3492
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013663Metagenome / Metatranscriptome269Y
F014996Metagenome / Metatranscriptome258Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0187809_100086783F013663GAGVPTRPDRDGDEQFRLLGAAWEEAARHWQDEVARQFEADHWMPLVQQSRGYLEALRSLLDMFEAAERETEF
Ga0187809_100086784F014996N/AVTTVHADIDALKGLREALVRFRYAQREVAERGGDEIELTRASLAAKASHWQARLEQDRAELEACRASGGPKAAPDSSAYVRAVEQTGERLEHVRRWQQRVEVEADEFRGTAGVFGGLLDSGLPRAETQLLALITSLEAARRVQASGS
Ga0187809_100086786F037832GGAMTPQERTVEPAMAPSPASSPYLSLRQAVRPAIFAHFLLAEDQERARQLAAECEDLLFLTRELLKAAGLADILGVGGADLGADPGSAPPEEEDGGDRQAQLLGAYAEAGMLWAKVVGSTMALAQALLGRGDRDGARRLAGFLADAGEDGPAAELNIQLGKAVWDSCRGPLQDISNTMPAAAIGTAIDALRVVLLEVPEDFPDRNREVNRFLPPLDASVLAIMREQEIDIPYSSRVEHIAAGGVARYPDIVKLSLDEIAAEFDGLCHRPGHQ
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