NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187809_10032355

Scaffold Ga0187809_10032355


Overview

Basic Information
Taxon OID3300017937 Open in IMG/M
Scaffold IDGa0187809_10032355 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1672
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006905Metagenome / Metatranscriptome362Y
F014996Metagenome / Metatranscriptome258Y

Sequences

Protein IDFamilyRBSSequence
Ga0187809_100323551F006905N/AAELKIQLGKAVWGTYREQLQDVSNTMPPEAISRTIDALRAVLLEVPEDVPDRNREVNRFLAPLAASVHAIMRDQGIDIPYSSRVEHIATGGVARYPDIVKLSLDEIAAEFEGTCNPPGHG
Ga0187809_100323552F001698AGGAGMSGVINDIDALAEFRAHLIQFNRDLAENFATIRGYWRELGEVWRDDMYRLFGEALDEVTPGITAYLAATEGHEAHLAALIERLRSYLETGLGAGAGTSRTETDRR
Ga0187809_100323553F014996AGGVGTNRVHADIDALKGFHEALVRFRYAQRGVAERGGDQIEMTRASLAAKASRWQSRLEQCHAELDACRAGGGEEAADCSAYVRAVEQTGERLEHIRRWQQRVDIEASEFGGTAGAYLDLLDSDLPRAESQLLAIITSLEAARRVPAAET
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