NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187854_10039885

Scaffold Ga0187854_10039885


Overview

Basic Information
Taxon OID3300017938 Open in IMG/M
Scaffold IDGa0187854_10039885 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2409
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004185Metagenome / Metatranscriptome449Y
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y
F087856Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0187854_100398851F087856GGCGGMSKLSRADYTEYLVGKTIKRVHWNNDEKRKCLTLEFADKTLCSFRFDLTVDEEAELSDFASGNPSKHRKLIPLPLVRLPIKPLL
Ga0187854_100398853F004185GGAGGMPLQKEFIRDGKRRIIGSVTTGYVGSFETIVRDEQNHITGRTSEGFNTTRDEHDKLVSINSADAGLLLGKRK
Ga0187854_100398854F015081AGGVHDYYSGEEEISVEDLIEEQRSLARSPNLIERVVGSLCIGAILKKQLMGLPSSAISQLMTDHISCRLNLLAPESVIAEIASQRLDEKYETSLVCPECRAQL
Ga0187854_100398855F006683N/AMNKPNRADVRQANVRVSGITFESVRLRHDLGSDDLDILIDDPQIGRFALTAAVPSLELLEEGSDWRQVTLDELKEILADDGELAEVAEEPQASETAERESFNRLVAEGEHIMNAEIALFNAGIPFLQLPFQQNKFASNLFMVLSVSTAKACLQRAGFQPKFDSETVLFDGGNGQAVQLIQGKYRLHRQRVRGWKRST
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