NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187853_10080506

Scaffold Ga0187853_10080506


Overview

Basic Information
Taxon OID3300017940 Open in IMG/M
Scaffold IDGa0187853_10080506 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1624
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000281Metagenome / Metatranscriptome1382Y
F013120Metagenome / Metatranscriptome274Y
F056257Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0187853_100805061F000281N/ARIAKLRDEIVQISEANKQYVQGGKKIPGAPEHERRLQRLQEILDELVSLTDWKKV
Ga0187853_100805063F056257N/AMTKLNLHGETVADYVRHSTHSGEYCEVTYRLMSDGVLLQQTLWARSKQAISKSPWKIAKVTPAIKANPDLLLTQGFQKKERYPTSL
Ga0187853_100805064F013120AGGAGGMEHFRLEHPPDRLVLCNRSKCEGIADYLEVNEHGGEDFVCAAHTSSERHASVLPKRVCVEPHRSRPAA
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