NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187850_10000217

Scaffold Ga0187850_10000217


Overview

Basic Information
Taxon OID3300017941 Open in IMG/M
Scaffold IDGa0187850_10000217 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)79042
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (91.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003300Metagenome495Y
F021887Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0187850_100002171F021887N/AMLAEMDEAVETGPVRAFPGRPARVDSLPALPLRPLIAEYTATFGSTWAAVTRRKHRDDFARLVDWLEARGLPVTTASLDFMTLVDYVTDLRSRPKVSGVWRGSADALARSIAAGPMQTLSANSVNAYVRPLRSLAIWLVDEGLLAVNPFRRSRRRAALNPLLPSEETPTKSATLDDLHALERGCAGDSALDLRDRAIV
Ga0187850_100002172F003300AGGAMLPTDDEFRAALRDILERSDLSMRALSAAMGRDTGYVAALLDPSRPSRARPTPADLVQASDATGIAFVELLEALWGIKSSRLAEELGCLGVGGSGQAAFERLGDSERREVRDFTEFLASRGRQRRRPNR
Ga0187850_1000021751F003300AGGAGGMIPDEREFRERLTEIQARSGLSMRALSAAMGRDTGYVAALLDPSRPSRARPTPADLMAASNATGIAFVELLEALWGIDPERLAREIRGFPDIGSADARSRKLTAAERSLVADFAELLVARPSRPRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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