NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187850_10092772

Scaffold Ga0187850_10092772


Overview

Basic Information
Taxon OID3300017941 Open in IMG/M
Scaffold IDGa0187850_10092772 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1475
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011432Metagenome / Metatranscriptome291Y
F053619Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0187850_100927721F011432GGAMENRELTMDDYLAMLRRRMKVILIPALLAPLAGFLVSYGFPAKYTSQS
Ga0187850_100927722F053619N/AGAHLMESVSSNVQNSVGGSSTSTISDALGSLELQRLWSNYDLSLDYLGGVGYYNASGIGLKQIEELGVDQKITWKRGELGIRDAFSYQPEGTFGSAYGSVGTIGAGLGGQAAFFGGTGLGALGQVPRIMNLGLVDVVQNLTPKSSVTATVGYGFVHFLGNQPGTGTSFIGNSQLSADVGYNRLLGRHDQVALVYGYQGFTFSTGVSFHSQIIQLMWGHRISGRMDFVIGAGPQFTQISNVLTPVSNPTSADTVPPCQFGGTLTSLVLECPTNNLLVSAAGRASLRYRFPKVSLDLTYDHFLTSGSGFFAGAESDIARLSATRPLGRIWTGFSDLGYSRNSRISPSTCSAGQSGANCSGVMANVYQYGYAGLGVRRNFGRNFQAFASYQFNELFFDSSYCGSTVPCNRVSQRQVGTIGLAWTPRPIRLD

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