Scaffold Ga0187808_10043012

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187808_10043012

Scaffold Ga0187808_10043012

Overview

Basic Information
Taxon OID	3300017942 Open in IMG/M
Scaffold ID	Ga0187808_10043012 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1896
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187808_100430122	F030458	N/A	MPFQAKITRARWVLGPFTSEDMLTIGNVVLDSIKDRLHKGLNINDEPAKPLKPGRNGRRGYPDYKAARGLQPFRDWFWTGRTLRSLKVKSASENRCIIGFIDPNADLIAHVNNIRERAFGISPKDRQALKAVLLAVLRTSRVVRVAKAA
Ga0187808_100430125	F031889	N/A	MYGSIPDQGITIKVPNPPKVARLRLPTSDEMLGRLAAQKSIRRTIGRRKSQTEYVPNPQADLALFNQLRLDKDGPEFDEFEASNALSKLTYCEVTECDRVGDEYRITLKTPFGDTIHTMKIPTQRDVTLYRRTVVSATDLPHGQEELRYRTEPAIDLYDSAVTKAEGYTDGLKMTDVPPHHKSAVVVELVQAIDDLDPQIDPNS

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