NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187808_10133466

Scaffold Ga0187808_10133466


Overview

Basic Information
Taxon OID3300017942 Open in IMG/M
Scaffold IDGa0187808_10133466 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1089
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003899Metagenome / Metatranscriptome463Y
F014331Metagenome / Metatranscriptome264Y

Sequences

Protein IDFamilyRBSSequence
Ga0187808_101334661F014331GGGGGMKAPACDPGDLCIALRAESTLFMPEIAKSAGTPERFQHVSPFAFFEVGFIGWIVRVSFAFDFDVSFDGSALGVVQPDFIWPSLVIAGFPEEGPVTIPAPVKVFRFEPARAFVRVPSSCPLPQTREDVAIHVSKRVFAHHVPMIVCPTANFRV
Ga0187808_101334662F003899GAGMTGFIVSVFPFRNRVSSKEAFEGLELGEGKLSRPVLRGPGGRKAAWLLGSDPMPAYRD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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