NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187819_10063593

Scaffold Ga0187819_10063593


Overview

Basic Information
Taxon OID3300017943 Open in IMG/M
Scaffold IDGa0187819_10063593 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2192
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025556Metagenome / Metatranscriptome201Y
F037373Metagenome / Metatranscriptome168Y
F079057Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0187819_100635931F079057N/AANMTMDNGDKVYGTWEGSASTDITKPVSLKIKILRGTGKYKGIKGSGTCSGKFNADGSFDETCTGTYSLGK
Ga0187819_100635933F025556N/AMEVRALNEGTAASWYKVTMTSGEYKAKRKALEDSFEAQFEYHGSKDGAALFLRRDEKSATWEYYFTPEAMAFSLSLVKEYAWGQKYAWGQACSAPSATLKNLSLCKGSAGDKYAYLMQPSTKDT
Ga0187819_100635934F037373AGGAGMAYVLRHLVNEGILVDLGEGLSEEGPFESREEAEQRLNELERDKKNGKFTIEELVLN
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