Basic Information | |
---|---|
Taxon OID | 3300017946 Open in IMG/M |
Scaffold ID | Ga0187879_10000010 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 230236 |
Total Scaffold Genes | 227 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 178 (78.41%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F000901 | Metagenome / Metatranscriptome | 844 | Y |
F006353 | Metagenome / Metatranscriptome | 375 | Y |
F017346 | Metagenome / Metatranscriptome | 241 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187879_10000010103 | F017346 | N/A | MGIFDSFRKEEVAGTRVLVGQLLPKFEEHFKSDLRVYKRFYPAAGGATFMSVAELRGAAGHNYDVLHLFCDVDASGVITDASGDRITGTELLKAAVDSGVKLLWIGNDNPQEAYDAGFKTKGPKINVVLTLRRLGSNTSLFLDSLLAKMQAGETFAKAWSVASQPKGKSVQPDVPHTISSLGRGSVVLK |
Ga0187879_1000001015 | F000901 | GGAG | MALNPAAYGMYSQNVPLNDVVHTLNQAGFENEDICMMLSPTHPIAQLIRDASLFNSEREANASTAGLIGWLSEFGAVMIPTVGFFIRSQAFFHALMVARDTAAFCGNSNTLVGLGFSDDEADRFEGELRHLGVLVYVSCSESARISWACEVLRHTGAREASTLRETNSLSTTAAA |
Ga0187879_10000010157 | F006353 | GAGG | MKSSLLLPIVLFLTFRLLAQSAPTTLYAESFRQGPTHIIEEKFDVKLTPQDRTYRERIKDLHGDDRYLLSFVPQGPEGDTEITSWQVKLADLHHSMYENVLMSSQGPSSNPKDALWRLEPSTFARVPLTAKRIIKVDSFYVVLQVKAHHFTPPDSPYLDSMTVSVEFSDTDPRTSGGTQK |
Ga0187879_1000001089 | F000249 | GGAGG | MKTLTWVLVFPLLACAFSLAQSSPSPTATQDSGISSSSPEERMFFPRDMFWGWAQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIARGFEFRVTQHFLFDRLGARDTYLGVADLGNNGPWGRYATVGVRKSFGTRRW |
⦗Top⦘ |