NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10000010

Scaffold Ga0187879_10000010


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10000010 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)230236
Total Scaffold Genes227 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)178 (78.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F000901Metagenome / Metatranscriptome844Y
F006353Metagenome / Metatranscriptome375Y
F017346Metagenome / Metatranscriptome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_10000010103F017346N/AMGIFDSFRKEEVAGTRVLVGQLLPKFEEHFKSDLRVYKRFYPAAGGATFMSVAELRGAAGHNYDVLHLFCDVDASGVITDASGDRITGTELLKAAVDSGVKLLWIGNDNPQEAYDAGFKTKGPKINVVLTLRRLGSNTSLFLDSLLAKMQAGETFAKAWSVASQPKGKSVQPDVPHTISSLGRGSVVLK
Ga0187879_1000001015F000901GGAGMALNPAAYGMYSQNVPLNDVVHTLNQAGFENEDICMMLSPTHPIAQLIRDASLFNSEREANASTAGLIGWLSEFGAVMIPTVGFFIRSQAFFHALMVARDTAAFCGNSNTLVGLGFSDDEADRFEGELRHLGVLVYVSCSESARISWACEVLRHTGAREASTLRETNSLSTTAAA
Ga0187879_10000010157F006353GAGGMKSSLLLPIVLFLTFRLLAQSAPTTLYAESFRQGPTHIIEEKFDVKLTPQDRTYRERIKDLHGDDRYLLSFVPQGPEGDTEITSWQVKLADLHHSMYENVLMSSQGPSSNPKDALWRLEPSTFARVPLTAKRIIKVDSFYVVLQVKAHHFTPPDSPYLDSMTVSVEFSDTDPRTSGGTQK
Ga0187879_1000001089F000249GGAGGMKTLTWVLVFPLLACAFSLAQSSPSPTATQDSGISSSSPEERMFFPRDMFWGWAQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIARGFEFRVTQHFLFDRLGARDTYLGVADLGNNGPWGRYATVGVRKSFGTRRW

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