NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10001194

Scaffold Ga0187879_10001194


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10001194 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17782
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004823Metagenome / Metatranscriptome422Y
F006399Metagenome / Metatranscriptome374Y
F017708Metagenome239Y
F017965Metagenome / Metatranscriptome237Y
F062069Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_1000119414F017708AGGAGMAKVIEFYIPKNFRKPLRTAAQPQLGKIIEFCLQTKRSA
Ga0187879_1000119415F062069GGAGGMEDGTSIRVRIDDEGYTHITVTQWNEDGREIVYREDEDFQCSEPQF
Ga0187879_100011943F004823AGGAGMYVTKAVNGVPAIQRDGQSVLRVCDQDWEFADWLCALLNELGHKSELLLNEQAWEWLNANDRAFRRAAQHA
Ga0187879_100011946F017965AGGAGGLKCLPVESVDNNRIDLTDISENIGHRDALYLFACHLEWRTKRNVAAYQELVSALDDHDGDIRRLAESLLHRSSPRPERTATSIKSCE
Ga0187879_100011947F006399GGAMVTPALNSRVQSLVTKYGVFWQFWPQFEQAHGERLLVGFEVELIGSHTSDLNHVDPACPSCRHVRSVLLVIADLMPGELSLSRNSLTYNIDSHSNSIICLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR
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