NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10027016

Scaffold Ga0187879_10027016


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10027016 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3500
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009413Metagenome / Metatranscriptome318Y
F092775Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_100270162F009413GGAMTQRDVTIKLLVDSQELAKSRHRFYRLLGAYLSVTYTGPDKFEFPANVRIDFVRHHDVLEGYEDPTELSNRLQNDIDTKVFETERQIKKNPKITDEKTALLREYEKVAAEFIEFISTQGLDPNTVVLTPGNPEAHGWVFFSTSNKWIGPWKEREDFILGVWMKDKIWQFPFSLPPTEGGLILRKPPE
Ga0187879_100270163F092775N/AMPNSSEDSSGVPQRRQMTAEQSPQVSGSLTSTAQIGQ
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Institute for Fundamental Biomedical Research
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