NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10054859

Scaffold Ga0187879_10054859


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10054859 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2339
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022957Metagenome / Metatranscriptome212Y
F105689Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_100548592F105689GGAGGMGHLSKGLRAAAFLSITIVALAGGCNHPRSTPEDATAVSHEVSQTLVGRQITIRGKFASLVKGDPYVVLDNQQEVWIGPRESTLEDTYSRMDGKLVEATGTLRFSHNPAPVDETRQRARQREPDHFYFEAKTTQLRLVSR
Ga0187879_100548593F022957GAGGMIGRRQRQILALIVMAVVGVGLGIWLFRTGFTVLGCAYIGVFLWRGQQFAVWFIAPHTAPSDVTPPLSSRWQRLLLSLICLFGAAVCAVGVYLWRLWPEEWQAGLVFVLFGLLVLAPVTIKEIQLRREAQAHFQSPTAK
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