NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10136926

Scaffold Ga0187879_10136926


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10136926 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1390
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005822Metagenome / Metatranscriptome389Y
F011771Metagenome / Metatranscriptome287Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_101369261F011771N/AIAGLHEMIDLKPDPKRENATASGPTKFGGLDQGDWLMIAISVLLGTVAKQHHFLDLSDQFLEWVLPFLLIVAGYWTRRKVTELIES
Ga0187879_101369262F014867GAGGMRTFFPSTYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALMARKRLRTQALGQDSSDKSRDARTRWFDRYDVFMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPRAVEFIEGRRKTKQAGRNGNNLTNFAAHAPASEAGTKTVVHAATKNGDLE
Ga0187879_101369263F005822GGAGMKVSEQPNAVNGAESIADSKITHPPASEVRRSRAVTDSKPTLPRNTATRRRRNRQDNLETSGEERFFLASGGGDGAVPALGRECGSEAEAIIDAFRERVNFYRLSEFQTRADVGPSGEPILRKDGLKKNNPAS
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