Basic Information | |
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Taxon OID | 3300017947 Open in IMG/M |
Scaffold ID | Ga0187785_10001372 Open in IMG/M |
Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8405 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Colombia: Department of Meta | |||||||
Coordinates | Lat. (o) | 4.2396 | Long. (o) | -73.2024 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013244 | Metagenome / Metatranscriptome | 273 | Y |
F024157 | Metagenome / Metatranscriptome | 207 | Y |
F039745 | Metagenome / Metatranscriptome | 163 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187785_1000137210 | F024157 | N/A | GIGAMRILFLTSLFLFTLWTSAWANWFNKSEEYLATCQEEAARKYYEGTSSAHVRRHIHLCMLAHGYAFKAGCDENGWLDPDCYRLKYKTEGR |
Ga0187785_100013726 | F013244 | AGGAGG | MKKLVSAIVALGIAVAFTAPSFAADVTTAKTKSACTKAGGMWDATAKACKPKS |
Ga0187785_100013727 | F039745 | GGAGG | MRLFGVMLALAVAASTQAMAFAPLHQRHARTTKEADGNGGCGMNYHRGISGACVLNPTAGPYKPDPYWLPCDYSSVLYPEGCGD |
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