NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187785_10079633

Scaffold Ga0187785_10079633


Overview

Basic Information
Taxon OID3300017947 Open in IMG/M
Scaffold IDGa0187785_10079633 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015013Metagenome / Metatranscriptome258Y
F019053Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0187785_100796331F015013GAGMILAGQQLRTVRWLLALAAGTLAVLLLAPSPASASTLADCLARQHVCVTSDGRSLISEGQQSQLERQIGGDGIYLVVAASGSAGYNSTMNQIISTLSGHRQFTAGFLDSRLRHFGAYNQGMLPSGGAAGIATRVVDQHRADQNVFAALTDFVTEVQDQDGAGGATAGAPSHALRNAAIGLGVVLGL
Ga0187785_100796332F019053N/ASGLPDSDFAAGNPGADVLRSLGALNIWLYQHPEYQRRIPVPDVRGLFYDVFVGVVGRLDLEITFVQLTEHPMLVEGLVVDQSPRPPAKIHQRGELTVQVWHPPAQATADPPGASAAG
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