NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10000007

Scaffold Ga0187847_10000007


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10000007 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)256790
Total Scaffold Genes229 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)157 (68.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003010Metagenome / Metatranscriptome513Y
F008261Metagenome / Metatranscriptome336Y
F018229Metagenome / Metatranscriptome236Y
F046506Metagenome / Metatranscriptome151Y
F074659Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_10000007122F003010GGAGMAKSGKKKSLLESIPVLVLLGLLAGAVGGLGIGLLQLKAMSSSASSASK
Ga0187847_10000007229F074659N/AKRVGLHYIAFSDPAIARARLVSLASSKIAESASAVTNFG
Ga0187847_1000000752F046506AGGMTTKTGNSISTAAHSERPIRPARSFSSLRWLNGSVHWISAVVLVYAFLINGETTGALRNAVAMRGEVKLGVVVGLIFLVRFIWVQSRRSGGGRWVGSSVRMPQSKIRGITDWGIYLGVGGSVVSGLMIAYLRPGAELIPQVRRFTTSSPALNATIDAHAFISNTLEWLCGFHAVYALWYWLAKRTEWGRIAGDWVERATSNAGRVGWSYLRGQKLRL
Ga0187847_1000000790F018229N/AMCRTPLWGVAGFLGCAYFAWVSFSHVIRNEYEWPHDGWTVATYIVWILLLTGLAYDTRCLRERMFFGVLVINFLAGCGLTLWHTIAVAEVRSARMATGALWAVAGLLSLTTLRGDSESRGSH
Ga0187847_1000000799F008261GGAGMKLWHLAYAALGIAVARWVFKRQPTPVSDPINRLRTSGLL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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