NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10001562

Scaffold Ga0187847_10001562


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10001562 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20255
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003233Metagenome / Metatranscriptome499Y
F006672Metagenome / Metatranscriptome367Y
F032049Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_1000156217F003233GAGGMKLQTFLVAVAILGTVLHPGAAQAKEKATQVDAPPLERILPGTSMQSDAVLSDVIARKPEMPLGPQDVLKSYEIAMSLVLEKTSADFSVIVQAQQTNQITREQAEYLLLQSYQTAMMQYQVLSALHNILKHDIDDAAGQQARQSLKTTSSDTVLVVPFPGSAPASR
Ga0187847_100015622F032049GGGGGMFHMMKHKPVMFGAVLLMVAMAMAQSQHEREALSVQGYQGQAGVIRYQGRVFVDAQALAQITNGSLSFEKNRITLTLPGPDGSSSSAEAHTSGFSRPFMRAAIEAMASVREWGGTLQAIVLNGYPVGNTTAGNTIIAFQGRAADSVALASAAASTDSDYRGLELLKNEFDNVQVWADGYAKARSSLNAADLSMSENQLNNDSEAQKIIHCGQFLAQMFASGNFQDDAVCH
Ga0187847_1000156222F006672AGGAGGMRTLDTLPGESNTSIISSIVNSVCPQCGGRMSEFQCEGRCCRNWLAECEWANQATRSSDSRRGHAGRSMR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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