NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10002912

Scaffold Ga0187847_10002912


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10002912 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13424
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F009414Metagenome / Metatranscriptome318Y
F090756Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_100029121F009414N/ALVKVCADPTCRVHHPNTPSPQQVERERAEERKRIEKEKLAITTRHRVLATILQRVSAPLKKADLLAVAHYLIGHLSYSQVPALAKRHKVEAKKDSVSAQDVLVKQVGTYDEAGLCKLLLEISLLDSAYQRSTVSRDDVLMDAAKRYRVDAERVQKAVAEELAAKRENKTKTKIKPKARRTAA
Ga0187847_100029125F007233GGAGMANRKQKEHQRQLNLDTFRDGIKGKVLQAVSISNELECRYISLEFEDKTELTISLDTRLTGKLELFDCKTGDHRLVHKIGLIPDDRPLWRPKA
Ga0187847_100029127F090756AGGAGMTIRIKHSSPNGRRGCPRGPKCRHCTWDSMHITVDGPHPKYTKGHRGDYNGDIDRAIDDFLATLKLEARRQLRDSAQATPAFRQFHLTFS
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