NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10003679

Scaffold Ga0187847_10003679


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10003679 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11579
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004586Metagenome / Metatranscriptome432Y
F025930Metagenome / Metatranscriptome199Y
F100522Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_1000367915F100522AGGVSTKFERWKELAARCLDEQNPAKLTELASEMNLVLAEKTPRLNLPLHATAGSQGEVQRDVLNANAEGKVCFT
Ga0187847_100036793F004586AGGAGMTTIEQNKCAHLPCRCVVQSGDKYCGLACKEAGSEEVEIACQCDHGTCPLTV
Ga0187847_100036799F025930AGGAMDVQDMSKEQLIDLADESGRNLENGKSQITSLEADQRKLVSLLLRLTKITGSLRNRLFELSMDNKALTESLEKRAPDVHALFSDLRSNAKDCPSLTDFPSIRELEESVEAILGPMH
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