Scaffold Ga0187847

Basic Information
Taxon OID	3300017948 Open in IMG/M
Scaffold ID	Ga0187847_10013722 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5241
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5241

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Minnesota

Coordinates

Lat. (^o)

47.5028

Long. (^o)

-93.4828

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F022571	Metagenome	213	Y
F096467	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187847_100137221	F096467	GGAG	MAAKAENLETARLDSESESDFRKRHKLMTELGPDIVDALMRDRTAEDVVVNPDGRVWIMRQGRPFEVLTEIPPLRAVG
Ga0187847_100137224	F017951	GGA	MAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMYCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAEADKAAATFREGRDILARPEIHASLSTQPHPNSYFAAKGKTMADYYEFLLHNSPRGTVASLVGKLREIATEPIQ
Ga0187847_100137225	F004301	GGAG	MTAMQFSLFNAPPQVGTVDAEPSVNARNAKRQLDTLRSQLATAQADLEDVNYNLSVVTMHQRASREGKIDANWWDAAMCFGMLDLDEQSTYRLGSYPVKVMRWIRHLIFTLHAERRDVRLAIAELEPKVATLSQIIGDAIK
Ga0187847_100137226	F003764	GAG	MQIQEGSTYVLDENPAALLAGSEIEAAALHRCLKIVRLWSQSSALSQSRHDEMIEEEQRIANLYAATLFEIGCAFGIELADELQVRIEAACILDPRECPPAEQGFLFPIPRDSANAASPARARK
Ga0187847_100137228	F003942	GGAG	MLGRRLNPAIHRYEDVELIEVHSEYLECSFLVAKDEWETGKILLNLFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGMAEAIELQRQAGHAIYADHLSVMLYGTGTNPARS
Ga0187847_100137229	F022571	AGGA	MEITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAEAFIEAEDLDGLDEWIHEEVIEPLNTYSVDQHKLDVPTASVTAPAEENQHITRRELASVLHGLRLMQEQWEPQMHGCTSIGLH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187847_10013722

Overview

Ecosystem & Geography

Associated Families

Sequences