NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10061087

Scaffold Ga0187847_10061087


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10061087 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2123
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0187847_100610872F017951GGAGMAIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRVKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
Ga0187847_100610873F004301GGAGMTAMQFSLFDARPSAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVNYNLSVVTMHQRASREGKIDANWWDAAMRFGMLDPCEEPVYRLGSYPVKVLRWIRHLLFTLNAERRDVLSAIADLEPKVAALSQIIGSAIQ
Ga0187847_100610874F003764GAGMQIQLDSPYAHDENPAALLAGAEIEAANLSRCLKIVRLWSQSSALPQSRHDEMIEEEQRLAKLYAAILFEIGSAFGLRAADELKVRIESACILDPWECPPAEQGRLFPMPGDPTTGASPATARK
Ga0187847_100610875F042119GAGMETIIREVNPARLAWGIFDHAKSDYVNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYHDKSGSAERAEEARNDPNGFYDRMTVKHGGQQFVLCGP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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