NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10151694

Scaffold Ga0187847_10151694


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10151694 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1267
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019896Metagenome / Metatranscriptome227Y
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0187847_101516941F025071GAGGMIQHSENSRREMTNAEAGVVGAVLGFGLVALLLYLAVERYHIRKEQLAEAGLYLFVIAAAVIAPVLRNFTTRGRRSKRPPFVIPA
Ga0187847_101516943F001473GGAGMESEYQTVGQMYARLRLMVRQRNDTGFRLAVTDAVLEPRNPFEPANKRRPKSVVAITLILALVLALIFLYFSFHHAR
Ga0187847_101516944F019896N/AFDRSLWTFQNAQLGTEYDSRLKTYDAPIPVKIRQCDPGVAEVGPGGTRIGLIALQLPAVNPDAKKTQPTVLRILFPIDRVGNLTATLVL

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