NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10348040

Scaffold Ga0187847_10348040


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10348040 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)812
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004392Metagenome / Metatranscriptome440N
F082398Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0187847_103480401F082398N/ADVLMILTVIVIYSSVSGLLRHAGLSEGTVGILPLILFTAGILLKPRAVRFIERRRKDRKAETHDGRSHMDVGEKQEIAGKETVERCQ
Ga0187847_103480402F004392AGGAMPVNGPETIADPKPSQPVPSEARSGRAAKNAKPAVGRGASTRRRRDRQDGSETNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRADIGRSGEPILRKETLKKNNPAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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