Scaffold Ga0181584_10011176

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0181584_10011176

Scaffold Ga0181584_10011176

Overview

Basic Information
Taxon OID	3300017949 Open in IMG/M
Scaffold ID	Ga0181584_10011176 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6648
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (69.23%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004255	Metagenome / Metatranscriptome	446	Y
F004546	Metagenome / Metatranscriptome	433	Y
F035678	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_1001117613	F004546	GAG	MDHNEEFPFDDFPWKLIYKDRNETRKCYFQTEEHRKQHMEKYKLKKKDVKLSYKFENE
Ga0181584_1001117615	F004255	AGGA	MELSEKAKIYRNVWSCAYQRRHMYRKSDRYYREHETILMCLNMKGAKWWEFDTEKPKYYTKYQE
Ga0181584_1001117616	F035678	GGAG	MSEEKQYSKYRLDQLAKELNGKWYHQTVSNNRTEYKRIVIEYGTKRKGEDL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.