Scaffold Ga0181584

Basic Information
Taxon OID	3300017949 Open in IMG/M
Scaffold ID	Ga0181584_10020099 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0181584_10020099 Open in IMG/M

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4884
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4884

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008687	Metagenome / Metatranscriptome	329	N
F015087	Metagenome / Metatranscriptome	257	N
F015991	Metagenome / Metatranscriptome	250	N
F099221	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181584_1002009910	F015087	N/A	MYGYSVWLVPLNHRLLTKVYKFRHIPHITISTNHATVPDPVNLGKLYNVVNFSPYGKIGKQYEIDPLHSLGWECEVEDLPIKHTPHLSHLYSFFPYTKVYSVYPTPMRLIAEVCVADTRSPNWEEWKIIKEKIPR
Ga0181584_1002009911	F015991	N/A	MAFLPFLRHGDLYDLLDTTSKVLNELPNMEKQFNTKMADRYLYKRTHTTDEGFEIEMHLPGVGKDNIHITLSSDDHEVTVTYGEKKSASFDLPSYVDVSDEGYKASYVDGVLRLFFKMRTSDKKRREIRLD
Ga0181584_100200993	F008687	N/A	MDKFLKTKKDNIFDKCEPGKLFLVKGWSTAQICKTIGASAVYVGTDTLRSQNVTENFFGFIGFSKADIVMDDSSMIKNELPGWRWIQQNRIKIHSRIFIPCENNLDTIQIQDKTLEPENNKEVVETLHQRDLFKTTKEIMDEVLTTKGKFKVNDYLGMHMDEPGNRMGIVQENYVQAKGITIEESSAIADHLVEADYWDNMMYSTMYNEQIHEQFVLSAVINPCAIIQNRIQDNKMAAARVWTKDFNMRLKKSLEKHWVRSDPDTMQVLRHKPEFIPEYCTNSSGIHFINQTSFGTKIKNDVLKSIKGVLKEREQDFL
Ga0181584_100200999	F099221	N/A	MQDLSLSQKAGVAITVAPTVLMFGPIPIFLASGDYWMRQIVKHKLQDNSVKFKPR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181584_10020099

Overview

Ecosystem & Geography

Associated Families

Sequences