NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10025280

Scaffold Ga0181584_10025280


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10025280 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4309
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021091Metagenome / Metatranscriptome220Y
F035650Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0181584_100252802F035650N/AMSDLEKVDKNNFLKQFESLRPDLFFPETWTEEDKEKAVELVKPQKTRTSMFSSIPMTCETTKCVFADTCPLLKENLAPRGKPCPLEMAIVAQFTAEYMEQLDVSPENLVEVSMVRDLVDQEVQYMRKTKLLAKEHFVQENVIGVDGDGQPILKKELHLAVELEDRLHKRRKDLRNQLLATREAKAKIGQSQIDSAQAISNILGKVQEIEIQREKALKKKLGIYDVDEYIEVQEAEIIENTES
Ga0181584_100252803F021091N/AMNEWKKFTDVNGDFQLANYIYKNLNDLMKHALDMGTLLSNDPQKLRAYKEQTKKLFKSRWHEIAQCLETFDIIEKCMCYSLEKEVYCDICKGSRYKLSSYITPNDVREVGIFVNASENSEIAEKLQKGLMKVIHEMSEV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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