NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181584_10072834

Scaffold Ga0181584_10072834


Overview

Basic Information
Taxon OID3300017949 Open in IMG/M
Scaffold IDGa0181584_10072834 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2384
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F016269Metagenome / Metatranscriptome248Y
F017473Metagenome240Y
F070055Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0181584_100728342F070055N/AMVFNKRKQAVKAHPNEHLIHDDCRVEIEIVHKAFGMNDGMNVLVIDNDTNEVVLDEWEPDFEWAWETAKYYSKKYNLEIVDAVPY
Ga0181584_100728345F008453N/AMSNYAVYRIFRDWNKRPKVLMDGLTREQAQTIVRNTPSEEDSMVVFDEMK
Ga0181584_100728346F017473N/AMTPQRKEEHIRNIAFCIQNGASGYVTDNFSIGDLPTPQRTGTLSQQDAYARGKARIIFDEFIEQNPNINE
Ga0181584_100728347F016269N/AMNVNDFIFICEEYNIDPVIASEDKGVRKILKTPTSNVNQQLMLSGYLHKNF
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