Scaffold Ga0181607

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10000433 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35989
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (78.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

35989

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (78.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001739	Metagenome	643	Y
F002997	Metagenome / Metatranscriptome	514	Y
F022651	Metagenome / Metatranscriptome	213	Y
F024506	Metagenome / Metatranscriptome	205	Y
F038150	Metagenome	166	Y
F092064	Metagenome / Metatranscriptome	107	Y
F096620	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100004331	F092064	GGA	MRAAPRQIIEFIRNPAAWDAKAFETAIRNEVENNTGNITASDELLIGLLVMVVETMITANLQIIDNGPIYEYNSGDAPSPWYKIRTESLDKAIKILAELALVARGRPKKSNKVSDVDELFATA
Ga0181607_1000043314	F022651	N/A	MTQHTTIQNTSDLLSFLVNQSEIRKDWFGFTQQRMTAVTLAHEIAASHAHHMTPAQVVAYALALNNEIYNKIIKG
Ga0181607_1000043320	F001739	N/A	MTTFTTTITAMYTLQQPDPNYVVNALWQVTGVDGSNTASIGGNTQFDSQQGAVFIPYDQLTEAVVIGWIPESAITSAQACVQGQIDSMITPPVSPANTPLPWAA
Ga0181607_1000043324	F024506	GGA	MSLQTILSIAETVAINDHKFAGQMLSRNMRISTSEILTVQPFQFTIKPNDYLLYSQNRAVLSALRVADRVAEQYLNYASTGWVNYIAYQGDMSAVQAAAVTVQAASSGKTIVLGTLPSITSTLFIVKAGDFIQVGRYAYIATANVTRGGGSTVNVPVHRSLIDAPTIGMLAVIGQYGTTVALGGSTYTGITFPVIVRDYPTYTLVPMTNDSFIAWSNAFSAMEVVL
Ga0181607_1000043329	F038150	GGAG	MTDDDFRRLESKVDKLTDAVGKLILFEERQANQGAKIVAFETQLSVHESMLHRTDRKVDQWVNRGVGIWAAAAIVFSFVQFWRK
Ga0181607_1000043335	F096620	AGGAG	MTPKFTQLLEKCILDGVVLGHKRAYKHNNAPSESDINQSIVNEVLTEIYEWFDFDDAKLKEKNHDL
Ga0181607_100004338	F002997	N/A	MAIARFENLSVNNLAFGKSTFGEQSTAQTVWFTTRGRVHSVANHVKITDKYRVYSDIVEFTLNYTPNIKTIVDNQNAYSITWRGFDWRIDNVREADDRMTAMFMCVRNDPVVAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181607_10000433

Overview

Ecosystem & Geography

Associated Families

Sequences