Scaffold Ga0181607_10019522

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181607_10019522

Scaffold Ga0181607_10019522

Overview

Basic Information
Taxon OID	3300017950 Open in IMG/M
Scaffold ID	Ga0181607_10019522 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5149
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010166	Metagenome / Metatranscriptome	307	Y
F014372	Metagenome / Metatranscriptome	263	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181607_100195223	F010166	AGGAG	MDMRSYEDWQVHDATEGSVEDVTWNSNDLLTLPWEATYMTDEIPEDSSWDTFATKNKKALEAMYAQWGVPKEGSLHYMSIRPALTKGLGSIISPYAHMTFNYNFLKLTPGCSLMWHFDTYATFVRYNNIAEDDVHNVCRTVIMMKDWDRGQVLQVGDEVYTHWQEGDTYTWKGDTWHGMANFGPSDIVVAQVTFLDENDRYTQ
Ga0181607_100195227	F014372	AGGA	MLHTIEDLIHRINLMKDKAILLHRVRNEFAEISYKEYDKITCQNLIADIQSIARGIANDTQGDEIKTEMDEWKK

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