NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181607_10046488

Scaffold Ga0181607_10046488


Overview

Basic Information
Taxon OID3300017950 Open in IMG/M
Scaffold IDGa0181607_10046488 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2978
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036694Metagenome169N
F048308Metagenome148N
F067741Metagenome125N
F076085Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181607_100464883F048308N/AMMYIELDIDQLNRLQMFNNRLKNIIDDLPRNSTGKRARYFEQVKVMELFIQQNLKKFI
Ga0181607_100464886F067741N/AMLTNPQKKEIMKKFKIDFLDCDKCIAFTKFTKWETIADCRLYAYVVMMNNVTTIQTFNITTI
Ga0181607_100464888F076085N/AMKDLLSVSEFATLHSVSHQAIYYKIKTNQIKYIMIGKTKFIEKTSKYKKRAKNNCFDNQIVTYKSKNKH
Ga0181607_100464889F036694N/ALSIKSIIDKHFADNYTYYKSVCKRYYNGRYLAEDLLHELYIKLSNPNPEQIERYHKANKLNCLGLLIIKDLFRHRTQKLFHIDGNTSNLFEAANFEILDFKQVDEEYFQIDEILIDKIKNCIFDGLLNQDHDIEVFVMAQIEPLYRMEQRTKINRSSLKKAYENARIKLKNNIK
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