Scaffold Ga0181577

Basic Information
Taxon OID	3300017951 Open in IMG/M
Scaffold ID	Ga0181577_10002127 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15655
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (46.88%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

15655

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (46.88%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (38.46%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001841	Metagenome / Metatranscriptome	627	Y
F002867	Metagenome / Metatranscriptome	524	Y
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F014614	Metagenome / Metatranscriptome	261	Y
F016805	Metagenome / Metatranscriptome	244	N
F017824	Metagenome	238	N
F025016	Metagenome / Metatranscriptome	203	Y
F027171	Metagenome / Metatranscriptome	195	N
F047029	Metagenome	150	N
F051901	Metagenome	143	N
F088830	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_1000212710	F051901	AGG	MTPPPKINFTKAAADMARADYLDALFFKDGRNNPDHPFHGTYTGLYQKYTLEKLR
Ga0181577_1000212711	F017824	N/A	MNNAVMQWKEDYEKSQRLGEGRSRTSAEKAELFELMIWMGGQGAMRDLIRAESLQQAIKFAKNRYPNCRVDVPPKAAKKPKLARSHTSPSLVEKRRKKAAEGK
Ga0181577_1000212712	F006109	N/A	MTRYVVMAGDRWVTAIYGPGKGIGVTSNKEDASSWPNYERAVVAARAAADCTNSPVAVHSIEEPSYRKA
Ga0181577_1000212714	F004722	GAG	MSRTGREMMLEWLYREIRLAKTADLQRAAAFLEWARGIRKGCSKQRGGARVAQANAWRKRVDGDVRW
Ga0181577_1000212715	F047029	GGCGG	MSEAVGSTPNNPIKLNQYRVTLYPKHGATENIYMEAPDVYTAHMYTRRVYPDHRILAIKPVVDLVEDRVS
Ga0181577_1000212724	F014614	N/A	MTDWYADYYRQSRGYNWNDLRELHSQPRRPSTSVPDCFKHEFADRAAYDAWVEEKRQDYF
Ga0181577_1000212726	F027171	GGAGG	VSQVLEIESLEFDPDGLIRVTAVVDEVVLTHHATQWDPEEYGSALCRGSFYLSDEDLIPATDAELAKLIAERVDDWAPIDPDE
Ga0181577_1000212727	F088830	N/A	MGRSEMACPFLLNYMEYTIKTDSLKLSSWYYAVLASKAVLQQKITELEGDSFFSPAFYIDKLEDLEDLEMFLKMSWDEWLASLAIDQTAVEETK
Ga0181577_1000212728	F001841	GAG	MIRYQVPNLFLGLMRVAAWLFWRDPVAKSEPPQPKRPRKPILGYNVGDIPYELMAVVRVEWYRKGMAYEVEEYQIEECPDAQAQFQYIVGTALKQGADVSVLTQYEPSALGVEE
Ga0181577_100021274	F016805	N/A	VDPFLTPLATAAIIAGVGALWRIDKRASIMDTRMALILEQITALRSDHKERLDDHERRIRTIEQKL
Ga0181577_100021275	F002867	N/A	VTTTVHSTCFEGGYKLEQMENERNEIYYRACKDSICRYAEDEYIARMYLEGMGWDPMQPPLP
Ga0181577_100021277	F025016	N/A	MDPTTLAALAILAAAGSEILTLLPIRSNSWVQLVISILNAISRKKS
Ga0181577_100021279	F003805	N/A	MRPLEHSTESCFHKAATDQWLVDRFNSGDYRGLLEAALILNTLHQLEKTKANWAIHEAADNLADHFGLDRDSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181577_10002127

Overview

Ecosystem & Geography

Associated Families

Sequences