NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10009970

Scaffold Ga0181577_10009970


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10009970 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7132
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007366Metagenome352N
F023580Metagenome209N
F100703Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_1000997015F023580N/AMNNIKLFLIRNYDSLEKASKEIGVTSNTVRNWCGRMPRNMLKYIPEISNTCGANYAEIVEEVLICEREGVE
Ga0181577_100099707F100703GGAMIKVSTRLVIITRSKAFKIPLDRRGWLQGINEGKVWEEYKESGYLAPLLWSWGGFVCMERVRPTDYVPPYLIANVKDKIPALDIVNCDLRRLENWGEHNGRTVLLDYGVDERISKMYK
Ga0181577_100099708F007366N/AMKFKETKLGKWFREKSPDVLEAVGEIVPGGELLQALGLLIDRTTESEEEKKKARLMLQELANADRASARNREVEVTKALGKRDYMQMFVGISAMLIGIALVIWAKNGVEDKEIFFHILGFAEGTLVGQVVNYYFGSSQK
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