NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10013964

Scaffold Ga0181577_10013964


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10013964 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5948
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059330Metagenome134N
F085559Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_100139645F059330N/AMTDKQIIEQTKDWLWELTEPREEFSGFGICPFLKKELTNDDMKFVILRGQDDSYGPDFKKDLDDWIKENKYNSILFICLGEIWEHIERKDYQLKLQKLMKEHGYEDYKALCFSPYEDRTAAGVKTRAGSPYFLINIMSSTDLGKAHQSIVKTKYFDNFTKQELIDIKIYGKNTKKALDINKNN
Ga0181577_100139647F085559AGGAGMTMNLQQQSDECGYALEAFAKVLKNNNIEAVGKPHIELIMEYQNEYKKIEIRNQRIENEMNFNFVQSEKTEAYKEWESSWIDWAKKKNEH
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